The organizational structure of Aroecology Europe association consists of the following bodies:
- General Assembly: the official meeting of members of the Association. The General Assembly defines the general strategy of the Association.
- Board: the members who have the responsibility delegated to them by the General Assembly to implement the strategy of the Association and to control finances and administration. The Board shall report to the General Assembly on the activities and the finances of the Association.
- Advisory Committee: a Standing Committee that has the responsibility to promote, implement and co-ordinate the programme of the Association as approved by the Board. It guarantees the vision of the Association.
- Working Groups: groups of members of the association who develop and organize activities in a specific area of interest/topic/knowledge. Working Groups shall be set up for a specific task and shall be abolished once the work has been completed.